Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs60600519 chr7:158648761 T/C 1.11E-16 174 25.67 19.83 3.17 KM Plot
PCPG rs60704894 chr2:241526556 G/T 7.15E-12 178 25.77 24.62 6.73 KM Plot
PCPG rs6076908 chr20:5987734 G/A 0 175 25.53 24.53 2.93 KM Plot
PCPG rs6076910 chr20:6005485 C/T 4.18E-5 178 25.53 23.08 15.1 KM Plot
PCPG rs6076913 chr20:6010724 T/C 0 176 25.67 23.08 2.93 KM Plot
PCPG rs6076917 chr20:6027799 G/A 0 177 25.47 23.08 2.93 KM Plot
PCPG rs6076919 chr20:6028393 A/C 0 178 25.47 23.53 2.93 KM Plot
PCPG rs6076920 chr20:6029317 C/G 0 178 25.47 23.53 2.93 KM Plot
PCPG rs60847675 chr2:191460140 T/C 0.000446 175 25.63 24.53 27.18 KM Plot
PCPG rs6085343 chr20:5986950 G/A 0 176 25.53 23.53 2.93 KM Plot
PCPG rs6085344 chr20:5988675 G/A 0 175 25.53 24.53 2.93 KM Plot
PCPG rs6085345 chr20:5990293 A/G 0 176 25.53 23.53 2.93 KM Plot
PCPG rs6085346 chr20:5990625 T/C 0 176 25.4 24.7 2.93 KM Plot
PCPG rs6085347 chr20:5992887 A/G 0 178 2.93 23.08 25.67 KM Plot
PCPG rs6085351 chr20:6001152 A/G 0 178 25.67 23.08 2.93 KM Plot